Variant report

Variant	rs13353520
Chromosome Location	chr3:85961960-85961961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10511069	1.00[AMR][1000 genomes]
rs11919968	1.00[AMR][1000 genomes]
rs11924201	1.00[AMR][1000 genomes]
rs13320595	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13325188	1.00[AMR][1000 genomes]
rs17023257	0.83[AMR][1000 genomes]
rs17023295	1.00[AMR][1000 genomes]
rs17023810	1.00[AMR][1000 genomes]
rs28611113	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4473548	1.00[AMR][1000 genomes]
rs56787903	1.00[AMR][1000 genomes]
rs57661808	1.00[AMR][1000 genomes]
rs58770804	1.00[AMR][1000 genomes]
rs59605482	1.00[AMR][1000 genomes]
rs6549066	1.00[AMR][1000 genomes]
rs6762825	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6764756	1.00[AMR][1000 genomes]
rs72906501	1.00[AMR][1000 genomes]
rs72908509	1.00[AMR][1000 genomes]
rs72908511	1.00[AMR][1000 genomes]
rs72908512	1.00[AMR][1000 genomes]
rs72908516	1.00[AMR][1000 genomes]
rs72908517	1.00[AMR][1000 genomes]
rs72908522	1.00[AMR][1000 genomes]
rs72908582	1.00[AMR][1000 genomes]
rs72908587	1.00[AMR][1000 genomes]
rs72908602	1.00[AMR][1000 genomes]
rs72910511	1.00[AMR][1000 genomes]
rs72910559	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72912429	1.00[AMR][1000 genomes]
rs72912437	1.00[AMR][1000 genomes]
rs72912471	1.00[AMR][1000 genomes]
rs72912474	1.00[AMR][1000 genomes]
rs72914830	1.00[AMR][1000 genomes]
rs72914833	1.00[AMR][1000 genomes]
rs72914835	1.00[AMR][1000 genomes]
rs72914844	1.00[AMR][1000 genomes]
rs72914849	1.00[AMR][1000 genomes]
rs7649694	1.00[AMR][1000 genomes]
rs7650035	1.00[AMR][1000 genomes]
rs9856802	1.00[AMR][1000 genomes]
rs9872154	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9874223	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9876097	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9880094	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877106	chr3:85814620-86006210	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv877108	chr3:85870363-86037162	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv877109	chr3:85892098-86006210	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv877110	chr3:85892098-86037162	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv877111	chr3:85892098-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
8	nsv460754	chr3:85917289-86006210	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv460755	chr3:85917289-86006210	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv590912	chr3:85917289-86006210	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv470727	chr3:85917289-86044224	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
12	nsv590913	chr3:85917289-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85952400-85964400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:85953400-85963000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:85961000-85965000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:85961600-85962000	Active TSS	A549	lung
5	chr3:85961800-85962000	Flanking Active TSS	Hela-S3	cervix
6	chr3:85961800-85962600	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links