Variant report

Variant	rs7649694
Chromosome Location	chr3:86088403-86088404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11919968	1.00[AMR][1000 genomes]
rs11924201	1.00[AMR][1000 genomes]
rs13320595	1.00[AMR][1000 genomes]
rs13325188	1.00[AMR][1000 genomes]
rs13353520	1.00[AMR][1000 genomes]
rs17023810	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28611113	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4473548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57661808	1.00[AMR][1000 genomes]
rs59605482	1.00[AMR][1000 genomes]
rs6549066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6762825	1.00[AMR][1000 genomes]
rs6764756	1.00[AMR][1000 genomes]
rs72908582	1.00[AMR][1000 genomes]
rs72908587	1.00[AMR][1000 genomes]
rs72908602	1.00[AMR][1000 genomes]
rs72910511	1.00[AMR][1000 genomes]
rs72910559	1.00[AMR][1000 genomes]
rs72912429	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72912437	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72912471	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72912474	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7650035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9856802	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9872154	1.00[AMR][1000 genomes]
rs9874223	1.00[AMR][1000 genomes]
rs9876097	1.00[AMR][1000 genomes]
rs9880094	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86088400-86089200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links