Variant report
| Variant | rs6549066 |
|---|---|
| Chromosome Location | chr3:86078712-86078713 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | JUND | chr3:86078627-86079328 | SK-N-SH | brain: | n/a | chr3:86078998-86079009 chr3:86079215-86079224 chr3:86078977-86078988 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CADM2-AS1 | TF binding region |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11919968 | 1.00[AMR][1000 genomes] |
| rs11921652 | 0.81[YRI][hapmap] |
| rs11924201 | 1.00[AMR][1000 genomes] |
| rs13320595 | 1.00[AMR][1000 genomes] |
| rs13325188 | 1.00[AMR][1000 genomes] |
| rs13353520 | 1.00[AMR][1000 genomes] |
| rs17023810 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28611113 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4473548 | 0.81[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57661808 | 1.00[AMR][1000 genomes] |
| rs59605482 | 1.00[AMR][1000 genomes] |
| rs6762825 | 1.00[AMR][1000 genomes] |
| rs6764756 | 1.00[AMR][1000 genomes] |
| rs72908582 | 1.00[AMR][1000 genomes] |
| rs72908587 | 1.00[AMR][1000 genomes] |
| rs72908602 | 1.00[AMR][1000 genomes] |
| rs72910511 | 1.00[AMR][1000 genomes] |
| rs72910559 | 1.00[AMR][1000 genomes] |
| rs72912429 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72912437 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72912471 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72912474 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7649694 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7650035 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9856802 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9872154 | 1.00[AMR][1000 genomes] |
| rs9872176 | 0.85[YRI][hapmap] |
| rs9874223 | 1.00[AMR][1000 genomes] |
| rs9876097 | 1.00[AMR][1000 genomes] |
| rs9880094 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv877112 | chr3:85964737-86083716 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
