Variant report

Variant	rs11921652
Chromosome Location	chr3:86080835-86080836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11919968	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11924201	1.00[AMR][1000 genomes]
rs13320595	1.00[AMR][1000 genomes]
rs13325188	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs13353520	1.00[AMR][1000 genomes]
rs17023810	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17024695	0.88[YRI][hapmap]
rs1900791	1.00[YRI][hapmap]
rs28611113	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4473548	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57661808	1.00[AMR][1000 genomes]
rs59605482	1.00[AMR][1000 genomes]
rs6549066	0.81[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6762825	1.00[AMR][1000 genomes]
rs6764756	1.00[AMR][1000 genomes]
rs6796380	0.81[YRI][hapmap]
rs72908582	1.00[AMR][1000 genomes]
rs72908587	1.00[AMR][1000 genomes]
rs72908602	1.00[AMR][1000 genomes]
rs72910511	1.00[AMR][1000 genomes]
rs72910559	1.00[AMR][1000 genomes]
rs72912429	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72912437	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72912471	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72912474	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7622132	0.88[YRI][hapmap]
rs7636187	0.89[YRI][hapmap]
rs7649694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7650035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9309996	0.83[YRI][hapmap]
rs9811856	1.00[YRI][hapmap]
rs9816884	1.00[YRI][hapmap]
rs9840424	0.94[YRI][hapmap]
rs9851502	0.85[YRI][hapmap]
rs9856802	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9863493	0.88[YRI][hapmap]
rs9872154	1.00[AMR][1000 genomes]
rs9872176	0.94[YRI][hapmap]
rs9874223	1.00[AMR][1000 genomes]
rs9876097	1.00[AMR][1000 genomes]
rs9880094	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	esv3331531	chr3:86080562-86084960	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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