Variant report

Variant	rs9840424
Chromosome Location	chr3:86020307-86020308
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11919968	0.94[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11921652	0.94[YRI][hapmap]
rs11924201	1.00[AMR][1000 genomes]
rs13320595	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13325188	0.83[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13353520	1.00[AMR][1000 genomes]
rs17023295	1.00[AMR][1000 genomes]
rs17023810	0.94[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17024695	0.82[YRI][hapmap]
rs1900791	0.94[YRI][hapmap]
rs28611113	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4473548	0.94[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57661808	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59605482	1.00[AMR][1000 genomes]
rs6549066	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6762825	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6764756	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72906501	1.00[AMR][1000 genomes]
rs72908509	1.00[AMR][1000 genomes]
rs72908511	1.00[AMR][1000 genomes]
rs72908512	1.00[AMR][1000 genomes]
rs72908516	1.00[AMR][1000 genomes]
rs72908517	1.00[AMR][1000 genomes]
rs72908522	1.00[AMR][1000 genomes]
rs72908582	1.00[AMR][1000 genomes]
rs72908587	1.00[AMR][1000 genomes]
rs72908602	1.00[AMR][1000 genomes]
rs72910511	1.00[AMR][1000 genomes]
rs72910559	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72912429	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72912437	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72912471	1.00[AMR][1000 genomes]
rs72912474	1.00[AMR][1000 genomes]
rs7622132	0.82[YRI][hapmap]
rs7636187	0.84[YRI][hapmap]
rs7649694	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7650035	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9811856	0.93[YRI][hapmap]
rs9816884	0.94[YRI][hapmap]
rs9856802	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9863493	0.82[YRI][hapmap]
rs9872154	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9872176	0.89[YRI][hapmap]
rs9874223	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9876097	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9880094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv877108	chr3:85870363-86037162	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv877110	chr3:85892098-86037162	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv877111	chr3:85892098-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	nsv470727	chr3:85917289-86044224	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
7	nsv590913	chr3:85917289-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
8	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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