Variant report

Variant	rs72906501
Chromosome Location	chr3:85828054-85828055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10511069	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11919968	1.00[AMR][1000 genomes]
rs11924201	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13320595	1.00[AMR][1000 genomes]
rs13325188	1.00[AMR][1000 genomes]
rs13353520	1.00[AMR][1000 genomes]
rs17023257	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17023295	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28611113	1.00[AMR][1000 genomes]
rs56787903	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58770804	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59605482	1.00[AMR][1000 genomes]
rs6762825	1.00[AMR][1000 genomes]
rs6764756	1.00[AMR][1000 genomes]
rs72908509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908511	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908516	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908517	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908522	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908582	1.00[AMR][1000 genomes]
rs72908587	1.00[AMR][1000 genomes]
rs72908602	1.00[AMR][1000 genomes]
rs72910511	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910559	1.00[AMR][1000 genomes]
rs72914830	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72914833	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72914835	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72914844	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72914849	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9872154	1.00[AMR][1000 genomes]
rs9874223	1.00[AMR][1000 genomes]
rs9876097	1.00[AMR][1000 genomes]
rs9880094	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1005102	chr3:85729640-85829412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv877106	chr3:85814620-86006210	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85828000-85828200	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links