Variant report
| Variant | rs72912474 |
|---|---|
| Chromosome Location | chr3:86119546-86119547 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CHMP2B-5 | chr3:86118793-86122014 | NONHSAT090663 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11919968 | 1.00[AMR][1000 genomes] |
| rs13320595 | 1.00[AMR][1000 genomes] |
| rs13325188 | 1.00[AMR][1000 genomes] |
| rs13353520 | 1.00[AMR][1000 genomes] |
| rs17023810 | 1.00[AMR][1000 genomes] |
| rs28611113 | 1.00[AMR][1000 genomes] |
| rs4473548 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57661808 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6549066 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6762825 | 1.00[AMR][1000 genomes] |
| rs6764756 | 1.00[AMR][1000 genomes] |
| rs72910511 | 1.00[AMR][1000 genomes] |
| rs72910559 | 1.00[AMR][1000 genomes] |
| rs72912429 | 1.00[AMR][1000 genomes] |
| rs72912437 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72912471 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7649694 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7650035 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9856802 | 1.00[AMR][1000 genomes] |
| rs9872154 | 1.00[AMR][1000 genomes] |
| rs9874223 | 1.00[AMR][1000 genomes] |
| rs9876097 | 1.00[AMR][1000 genomes] |
| rs9880094 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:86111000-86119600 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
