Variant report

Variant	rs17023810
Chromosome Location	chr3:86054260-86054261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11919968	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11921652	1.00[YRI][hapmap]
rs11924201	1.00[AMR][1000 genomes]
rs13320595	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13325188	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs13353520	1.00[AMR][1000 genomes]
rs17024695	0.94[LWK][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap]
rs1900791	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs28611113	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4473548	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57661808	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59605482	1.00[AMR][1000 genomes]
rs6549066	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6762825	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6764756	1.00[AMR][1000 genomes]
rs6796380	0.83[YRI][hapmap]
rs72908582	1.00[AMR][1000 genomes]
rs72908587	1.00[AMR][1000 genomes]
rs72908602	1.00[AMR][1000 genomes]
rs72910511	1.00[AMR][1000 genomes]
rs72910559	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72912429	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72912437	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72912471	1.00[AMR][1000 genomes]
rs72912474	1.00[AMR][1000 genomes]
rs7622132	0.87[YRI][hapmap]
rs7636187	0.89[YRI][hapmap]
rs7649694	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7650035	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9309996	0.87[YRI][hapmap]
rs9811856	1.00[YRI][hapmap]
rs9816884	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs9840424	0.94[YRI][hapmap]
rs9851502	0.89[YRI][hapmap]
rs9856802	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9863493	0.87[YRI][hapmap]
rs9872154	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9872176	0.94[YRI][hapmap]
rs9874223	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9876097	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9880094	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86040400-86064000	Weak transcription	Brain Hippocampus Middle	brain

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