Variant report

Variant	rs72912429
Chromosome Location	chr3:86040903-86040904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11919968	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11924201	1.00[AMR][1000 genomes]
rs13320595	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13325188	1.00[AMR][1000 genomes]
rs13353520	1.00[AMR][1000 genomes]
rs17023810	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28611113	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4473548	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57661808	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59605482	1.00[AMR][1000 genomes]
rs6549066	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6762825	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6764756	1.00[AMR][1000 genomes]
rs72908509	1.00[AMR][1000 genomes]
rs72908511	1.00[AMR][1000 genomes]
rs72908512	1.00[AMR][1000 genomes]
rs72908516	1.00[AMR][1000 genomes]
rs72908517	1.00[AMR][1000 genomes]
rs72908522	1.00[AMR][1000 genomes]
rs72908582	1.00[AMR][1000 genomes]
rs72908587	1.00[AMR][1000 genomes]
rs72908602	1.00[AMR][1000 genomes]
rs72910511	1.00[AMR][1000 genomes]
rs72910559	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72912437	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72912471	1.00[AMR][1000 genomes]
rs72912474	1.00[AMR][1000 genomes]
rs7649694	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7650035	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9856802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9872154	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9874223	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9876097	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9880094	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877111	chr3:85892098-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
3	nsv470727	chr3:85917289-86044224	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv590913	chr3:85917289-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86028000-86043000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:86040400-86064000	Weak transcription	Brain Hippocampus Middle	brain

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