Variant report
| Variant | rs17024695 |
|---|---|
| Chromosome Location | chr3:86103602-86103603 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11919968 | 0.89[LWK][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs11921652 | 0.88[YRI][hapmap] |
| rs13320595 | 1.00[AMR][1000 genomes] |
| rs13325188 | 1.00[AMR][1000 genomes] |
| rs13353520 | 1.00[AMR][1000 genomes] |
| rs17023810 | 0.94[LWK][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1900791 | 0.89[LWK][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap] |
| rs28611113 | 1.00[AMR][1000 genomes] |
| rs4473548 | 0.88[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57661808 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6549066 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6762825 | 1.00[AMR][1000 genomes] |
| rs6764756 | 1.00[AMR][1000 genomes] |
| rs72908602 | 1.00[AMR][1000 genomes] |
| rs72910511 | 1.00[AMR][1000 genomes] |
| rs72910559 | 1.00[AMR][1000 genomes] |
| rs72912429 | 1.00[AMR][1000 genomes] |
| rs72912437 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72912471 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72912474 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7649694 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7650035 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9811856 | 0.92[YRI][hapmap] |
| rs9816884 | 0.89[LWK][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap] |
| rs9840424 | 0.82[YRI][hapmap] |
| rs9856802 | 1.00[AMR][1000 genomes] |
| rs9872154 | 1.00[AMR][1000 genomes] |
| rs9872176 | 0.82[YRI][hapmap] |
| rs9874223 | 1.00[AMR][1000 genomes] |
| rs9876097 | 1.00[AMR][1000 genomes] |
| rs9880094 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
