Variant report

Variant	rs9309994
Chromosome Location	chr3:85899156-85899157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11721040	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11926524	1.00[CEU][hapmap]
rs12714637	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12714640	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13068138	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13078807	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13078960	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13085840	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13098327	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13327074	1.00[YRI][hapmap]
rs1448612	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1597213	0.84[CEU][hapmap];0.91[EUR][1000 genomes]
rs17355368	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2122042	0.89[CEU][hapmap]
rs71316810	1.00[ASN][1000 genomes]
rs7620339	0.84[CEU][hapmap]
rs7622475	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7638804	1.00[YRI][hapmap]
rs7640660	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7640855	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9309990	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9309991	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9309995	1.00[YRI][hapmap]
rs9818122	0.89[CEU][hapmap]
rs9820014	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9826482	1.00[CEU][hapmap]
rs9837525	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9852127	0.93[CEU][hapmap];1.00[YRI][hapmap]
rs9852478	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9852859	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9869320	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9873441	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9875880	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9877300	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877106	chr3:85814620-86006210	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv877108	chr3:85870363-86037162	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv877109	chr3:85892098-86006210	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv877110	chr3:85892098-86037162	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv877111	chr3:85892098-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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