Variant report

Variant	rs9309995
Chromosome Location	chr3:85964524-85964525
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:85963263..85965350-chr3:85981290..85983775,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10084664	0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs12714637	1.00[YRI][hapmap]
rs12714640	1.00[CHD][hapmap];1.00[YRI][hapmap]
rs13059866	1.00[CHD][hapmap]
rs13068138	1.00[YRI][hapmap]
rs13078807	1.00[CHD][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap]
rs13078960	1.00[YRI][hapmap]
rs13098327	1.00[YRI][hapmap]
rs13320560	0.84[TSI][hapmap]
rs13327074	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHD][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap]
rs1448612	1.00[YRI][hapmap]
rs17355368	1.00[YRI][hapmap]
rs2324974	0.83[TSI][hapmap]
rs34553213	0.80[EUR][1000 genomes]
rs4443171	0.83[TSI][hapmap]
rs4499617	0.80[EUR][1000 genomes]
rs71316819	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71316820	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7355953	1.00[CHD][hapmap]
rs7428746	0.88[EUR][1000 genomes]
rs7620339	1.00[CHD][hapmap]
rs7622475	1.00[CHD][hapmap];1.00[YRI][hapmap]
rs7638804	0.80[CEU][hapmap];1.00[YRI][hapmap]
rs7640660	1.00[CHD][hapmap]
rs7640855	1.00[YRI][hapmap]
rs7646410	0.84[TSI][hapmap]
rs9309990	1.00[YRI][hapmap]
rs9309991	1.00[YRI][hapmap]
rs9309994	1.00[YRI][hapmap]
rs9812103	0.84[TSI][hapmap]
rs9818122	1.00[CHD][hapmap]
rs9820014	1.00[YRI][hapmap]
rs9831465	0.80[EUR][1000 genomes]
rs9840565	0.84[TSI][hapmap]
rs9852127	1.00[YRI][hapmap]
rs9852478	1.00[YRI][hapmap]
rs9852859	1.00[YRI][hapmap]
rs9869154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9869320	1.00[YRI][hapmap]
rs9877300	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877106	chr3:85814620-86006210	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv877108	chr3:85870363-86037162	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv877109	chr3:85892098-86006210	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv877110	chr3:85892098-86037162	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv877111	chr3:85892098-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
8	nsv460754	chr3:85917289-86006210	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv460755	chr3:85917289-86006210	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv590912	chr3:85917289-86006210	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv470727	chr3:85917289-86044224	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
12	nsv590913	chr3:85917289-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85961000-85965000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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