Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12714640	1.00[CHD][hapmap];1.00[MKK][hapmap]
rs13077660	1.00[CHD][hapmap];0.86[MKK][hapmap]
rs13078807	1.00[CHD][hapmap];1.00[MKK][hapmap]
rs13083559	1.00[AFR][1000 genomes]
rs13096280	1.00[CHD][hapmap];0.91[MKK][hapmap]
rs13098327	0.85[MKK][hapmap]
rs1375547	0.86[MKK][hapmap]
rs3159	0.82[EUR][1000 genomes]
rs35686664	1.00[AFR][1000 genomes]
rs7355953	1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[MKK][hapmap]
rs7620339	1.00[CHD][hapmap]
rs7622475	1.00[CHD][hapmap];1.00[MKK][hapmap]
rs7628948	1.00[CHD][hapmap];0.86[MKK][hapmap]
rs7640660	1.00[CHD][hapmap]
rs9309995	1.00[CHD][hapmap]
rs9818122	1.00[CHD][hapmap]
rs9819476	1.00[CHD][hapmap];0.91[MKK][hapmap]
rs9834708	1.00[CHD][hapmap];0.95[MKK][hapmap]
rs9852859	1.00[MKK][hapmap]
rs9877300	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1005102	chr3:85729640-85829412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv460753	chr3:85789007-85820416	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv590911	chr3:85789007-85820416	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13059866	HTR1F	cis	parietal	SCAN
rs13059866	CADM2	cis	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85784800-85793800	Weak transcription	Psoas Muscle	Psoas
2	chr3:85790200-85795200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:85792200-85793000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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