Variant report

Variant	rs4443171
Chromosome Location	chr3:86030144-86030145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10084664	0.89[TSI][hapmap]
rs11914992	0.89[CEU][hapmap]
rs11918000	0.83[ASN][1000 genomes]
rs11922573	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11922904	0.89[CEU][hapmap]
rs11924652	0.95[EUR][1000 genomes]
rs12629011	0.87[EUR][1000 genomes]
rs12714643	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs12714646	0.85[EUR][1000 genomes]
rs13061466	0.85[EUR][1000 genomes]
rs13070277	0.90[JPT][hapmap]
rs13316083	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs13319689	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13320560	0.89[TSI][hapmap]
rs13327074	0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs2324974	0.81[CHB][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2324979	0.84[CHD][hapmap]
rs2324980	0.81[CHD][hapmap]
rs28708559	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2875497	0.89[CEU][hapmap]
rs28847694	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28847736	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35215849	0.89[CEU][hapmap];0.94[TSI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35684639	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6765959	0.81[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6766354	0.90[JPT][hapmap]
rs6771277	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6782241	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6785190	0.80[EUR][1000 genomes]
rs6801296	0.88[CEU][hapmap]
rs6805498	0.89[CEU][hapmap];0.86[YRI][hapmap]
rs6806454	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7613116	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7619493	0.89[CEU][hapmap];0.84[CHD][hapmap];0.93[LWK][hapmap];0.95[MKK][hapmap];0.94[TSI][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7630558	0.89[CEU][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7630657	0.89[CEU][hapmap]
rs7634457	0.89[CEU][hapmap]
rs7638804	0.87[EUR][1000 genomes]
rs7646410	0.89[TSI][hapmap]
rs9309995	0.83[TSI][hapmap]
rs9309998	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs9810010	0.87[EUR][1000 genomes]
rs9810027	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9812103	0.81[CHB][hapmap];0.90[JPT][hapmap];0.89[TSI][hapmap];0.86[ASN][1000 genomes]
rs9812581	0.85[EUR][1000 genomes]
rs9819556	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs9824878	0.89[CEU][hapmap]
rs9824909	0.89[CEU][hapmap]
rs9825758	0.87[EUR][1000 genomes]
rs9828350	0.89[CEU][hapmap];0.88[TSI][hapmap]
rs9829960	0.89[CEU][hapmap];0.94[TSI][hapmap]
rs9830630	0.89[CEU][hapmap]
rs9830762	0.89[CEU][hapmap]
rs9837508	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9840565	0.89[TSI][hapmap]
rs9845052	0.89[CEU][hapmap];0.84[CHD][hapmap];0.93[LWK][hapmap];0.95[MKK][hapmap];0.94[TSI][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9846504	0.89[CEU][hapmap]
rs9856754	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs9866277	0.89[CEU][hapmap];0.94[TSI][hapmap]
rs9874892	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9876425	0.82[ASN][1000 genomes]
rs9880964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9881057	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9881372	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv877108	chr3:85870363-86037162	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv877110	chr3:85892098-86037162	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv877111	chr3:85892098-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	nsv470727	chr3:85917289-86044224	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
7	nsv590913	chr3:85917289-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
8	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86027800-86030600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:86028000-86043000	Weak transcription	Brain Inferior Temporal Lobe	brain

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