Variant report
Variant | rs6785190 |
---|---|
Chromosome Location | chr3:86057280-86057281 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | CEBPB | chr3:86057128-86057450 | Hela-S3 | cervix: | n/a | chr3:86057313-86057326 |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
PRKRIRP2 | TF binding region |
rs_ID | r2[population] |
---|---|
rs11922573 | 0.84[EUR][1000 genomes] |
rs11924652 | 0.85[EUR][1000 genomes] |
rs12629011 | 0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs13319689 | 0.82[EUR][1000 genomes] |
rs13323149 | 0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs17024876 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2324979 | 0.81[EUR][1000 genomes] |
rs28699216 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs28708559 | 0.82[EUR][1000 genomes] |
rs35215849 | 0.82[EUR][1000 genomes] |
rs35684639 | 0.82[EUR][1000 genomes] |
rs4443171 | 0.80[EUR][1000 genomes] |
rs6771277 | 0.83[EUR][1000 genomes] |
rs6782241 | 0.85[EUR][1000 genomes] |
rs6806454 | 0.81[EUR][1000 genomes] |
rs7613116 | 0.83[EUR][1000 genomes] |
rs7619493 | 0.83[EUR][1000 genomes] |
rs7630558 | 0.85[EUR][1000 genomes] |
rs9310001 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs9810010 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs9810027 | 0.83[EUR][1000 genomes] |
rs9812581 | 0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs9816329 | 0.82[EUR][1000 genomes] |
rs9837508 | 0.80[EUR][1000 genomes] |
rs9838412 | 0.81[EUR][1000 genomes] |
rs9842732 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs9845052 | 0.83[EUR][1000 genomes] |
rs9847210 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs9874892 | 0.84[EUR][1000 genomes] |
rs9878268 | 0.85[ASN][1000 genomes] |
rs9881057 | 0.84[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
2 | nsv877112 | chr3:85964737-86083716 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:86040400-86064000 | Weak transcription | Brain Hippocampus Middle | brain |
2 | chr3:86056800-86057600 | Enhancers | Colon Smooth Muscle | Colon |