Variant report

Variant	rs9838412
Chromosome Location	chr3:86120301-86120302
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHMP2B-5	chr3:86118793-86122014	NONHSAT090663
2	lnc-CHMP2B-5	chr3:86119660-86122806	NONHSAT090664

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11914992	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs11922904	0.81[CHB][hapmap]
rs11924652	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13316470	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs17024876	0.94[EUR][1000 genomes]
rs2324979	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2324980	0.84[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs28699216	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28847694	0.85[EUR][1000 genomes]
rs28847736	0.84[EUR][1000 genomes]
rs35215849	0.81[AMR][1000 genomes]
rs6771277	0.81[AMR][1000 genomes]
rs6782241	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6785190	0.81[EUR][1000 genomes]
rs6801296	0.93[JPT][hapmap]
rs6805498	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs6806454	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7619493	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs7630558	0.94[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7634457	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs9310001	1.00[CEU][hapmap];0.80[CHB][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9810027	0.81[AMR][1000 genomes]
rs9816329	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9824878	0.86[YRI][hapmap]
rs9824909	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs9828350	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs9830762	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs9842732	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9845052	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs9846504	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs9847210	0.80[EUR][1000 genomes]
rs9862608	0.84[CEU][hapmap]
rs9866277	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs9874892	0.81[AMR][1000 genomes]
rs9881057	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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