Variant report

Variant	rs13316470
Chromosome Location	chr3:86076585-86076586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11922573	0.84[EUR][1000 genomes]
rs11922904	0.81[CHB][hapmap]
rs11924652	0.85[EUR][1000 genomes]
rs12629011	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13319689	0.82[EUR][1000 genomes]
rs13323149	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17024876	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2324979	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs28699216	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28708559	0.82[EUR][1000 genomes]
rs2875497	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35215849	0.82[EUR][1000 genomes]
rs35684639	0.82[EUR][1000 genomes]
rs4443171	0.80[EUR][1000 genomes]
rs6771277	0.83[EUR][1000 genomes]
rs6782241	0.89[CHB][hapmap];0.85[EUR][1000 genomes]
rs6785190	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6806454	0.81[EUR][1000 genomes]
rs7613116	0.83[EUR][1000 genomes]
rs7619493	0.83[EUR][1000 genomes]
rs7630558	0.88[CHB][hapmap];0.85[EUR][1000 genomes]
rs7630657	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9310001	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9810010	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9810027	0.83[EUR][1000 genomes]
rs9812581	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9816329	0.92[CEU][hapmap];0.84[CHB][hapmap];0.84[EUR][1000 genomes]
rs9824909	0.89[CHB][hapmap]
rs9828350	0.89[CHB][hapmap]
rs9829960	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs9830630	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9837508	0.80[EUR][1000 genomes]
rs9838412	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs9842732	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9845052	0.83[EUR][1000 genomes]
rs9846504	0.89[CHB][hapmap]
rs9847210	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9862608	0.85[CEU][hapmap];0.84[CHB][hapmap]
rs9866277	0.89[CHB][hapmap]
rs9874892	0.84[EUR][1000 genomes]
rs9878268	0.91[ASN][1000 genomes]
rs9881057	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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