Variant report

Variant	rs9866277
Chromosome Location	chr3:86105340-86105341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10084664	0.84[TSI][hapmap]
rs11914992	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs11922573	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11922904	1.00[CEU][hapmap]
rs11924652	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12629011	0.86[EUR][1000 genomes]
rs12714646	0.81[EUR][1000 genomes]
rs13061466	0.81[EUR][1000 genomes]
rs13316470	0.89[CHB][hapmap]
rs13319689	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs13320560	0.84[TSI][hapmap]
rs13327074	0.80[CEU][hapmap];0.82[TSI][hapmap]
rs2324974	0.86[GIH][hapmap];0.94[TSI][hapmap]
rs2324979	0.86[CHD][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];0.80[LWK][hapmap];0.80[MEX][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2324980	0.83[CHD][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs28699216	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28708559	0.91[EUR][1000 genomes]
rs2875497	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs28847694	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28847736	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35215849	1.00[CEU][hapmap];0.83[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35684639	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4443171	0.89[CEU][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]
rs6771277	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6782241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6801296	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs6805498	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs6806454	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7613116	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7619493	1.00[CEU][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7630558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7630657	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs7634457	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs7638804	0.80[CEU][hapmap]
rs7646410	0.84[TSI][hapmap]
rs9310001	0.94[GIH][hapmap];0.82[MEX][hapmap];0.80[EUR][1000 genomes]
rs9810010	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9810027	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9812103	0.84[TSI][hapmap]
rs9812581	0.84[EUR][1000 genomes]
rs9816329	0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9824878	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs9824909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9828350	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap]
rs9829960	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs9830630	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs9830762	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs9837508	0.89[EUR][1000 genomes]
rs9838412	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9840565	0.84[TSI][hapmap]
rs9845052	1.00[CEU][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9846504	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs9874892	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9880964	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs9881057	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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