Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr3:86057128-86057450	Hela-S3	cervix:	n/a	chr3:86057313-86057326

Variant related genes	Relation type
PRKRIRP2	TF binding region

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11710933	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11922573	0.88[EUR][1000 genomes]
rs11924652	0.87[EUR][1000 genomes]
rs12714646	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13319689	0.88[EUR][1000 genomes]
rs13325775	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13327074	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28708559	0.88[EUR][1000 genomes]
rs28847694	0.81[EUR][1000 genomes]
rs28847736	0.81[EUR][1000 genomes]
rs35215849	0.86[EUR][1000 genomes]
rs35356576	0.81[AMR][1000 genomes]
rs35684639	0.86[EUR][1000 genomes]
rs35975955	0.81[AMR][1000 genomes]
rs4443171	0.85[EUR][1000 genomes]
rs6771277	0.89[EUR][1000 genomes]
rs6782241	0.87[EUR][1000 genomes]
rs6806454	0.87[EUR][1000 genomes]
rs7613116	0.89[EUR][1000 genomes]
rs7619493	0.89[EUR][1000 genomes]
rs7630558	0.87[EUR][1000 genomes]
rs7638804	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9810027	0.87[EUR][1000 genomes]
rs9825758	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9837508	0.85[EUR][1000 genomes]
rs9845052	0.89[EUR][1000 genomes]
rs9860993	0.81[AMR][1000 genomes]
rs9874892	0.88[EUR][1000 genomes]
rs9880964	0.84[EUR][1000 genomes]
rs9881057	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86040400-86064000	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:86056800-86057600	Enhancers	Colon Smooth Muscle	Colon

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