Variant report
| Variant | rs13325775 |
|---|---|
| Chromosome Location | chr3:86137307-86137308 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs11710933 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11914992 | 0.90[CEU][hapmap] |
| rs11922904 | 1.00[CEU][hapmap] |
| rs12714646 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs13061466 | 0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs13319689 | 0.90[CEU][hapmap] |
| rs13327074 | 0.89[CEU][hapmap];1.00[YRI][hapmap] |
| rs2875497 | 0.89[CEU][hapmap] |
| rs35215849 | 0.90[CEU][hapmap] |
| rs35356576 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs35975955 | 0.92[AMR][1000 genomes] |
| rs4443171 | 0.89[CEU][hapmap] |
| rs6782241 | 0.90[CEU][hapmap] |
| rs6801296 | 0.89[CEU][hapmap] |
| rs6805498 | 0.90[CEU][hapmap] |
| rs7619493 | 0.90[CEU][hapmap] |
| rs7630558 | 0.90[CEU][hapmap] |
| rs7630657 | 0.90[CEU][hapmap] |
| rs7634457 | 0.90[CEU][hapmap] |
| rs7638804 | 0.89[CEU][hapmap];1.00[YRI][hapmap] |
| rs9309995 | 1.00[YRI][hapmap] |
| rs9824878 | 0.90[CEU][hapmap] |
| rs9824909 | 0.90[CEU][hapmap] |
| rs9828350 | 0.90[CEU][hapmap] |
| rs9829960 | 0.90[CEU][hapmap] |
| rs9830630 | 0.90[CEU][hapmap] |
| rs9830762 | 0.90[CEU][hapmap] |
| rs9845052 | 0.90[CEU][hapmap] |
| rs9846504 | 0.90[CEU][hapmap] |
| rs9853144 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs9860993 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs9866277 | 0.90[CEU][hapmap] |
| rs9877300 | 1.00[YRI][hapmap] |
| rs9877447 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs9880964 | 0.82[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:86136400-86137400 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
