Variant report

Variant	rs13319689
Chromosome Location	chr3:86041243-86041244
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11914992	1.00[CEU][hapmap]
rs11922573	0.98[EUR][1000 genomes]
rs11922904	1.00[CEU][hapmap]
rs11924652	0.97[EUR][1000 genomes]
rs12629011	0.89[EUR][1000 genomes]
rs12714643	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs12714646	0.88[EUR][1000 genomes]
rs13061466	0.88[EUR][1000 genomes]
rs13070277	0.91[JPT][hapmap]
rs13316083	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs13327074	0.80[CEU][hapmap];0.85[EUR][1000 genomes]
rs2324974	0.81[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28708559	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2875497	1.00[CEU][hapmap]
rs28847694	0.91[EUR][1000 genomes]
rs28847736	0.92[EUR][1000 genomes]
rs35215849	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs35684639	0.96[EUR][1000 genomes]
rs4443171	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6765959	0.81[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs6766354	0.91[JPT][hapmap]
rs6771277	0.99[EUR][1000 genomes]
rs6782241	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6785190	0.82[EUR][1000 genomes]
rs6801296	1.00[CEU][hapmap]
rs6805498	1.00[CEU][hapmap]
rs6806454	0.93[EUR][1000 genomes]
rs7613116	0.99[EUR][1000 genomes]
rs7619493	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs7630558	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs7630657	1.00[CEU][hapmap]
rs7634457	1.00[CEU][hapmap]
rs7638804	0.80[CEU][hapmap];0.89[EUR][1000 genomes]
rs9309998	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs9810010	0.89[EUR][1000 genomes]
rs9810027	0.97[EUR][1000 genomes]
rs9812103	0.81[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs9812581	0.87[EUR][1000 genomes]
rs9819556	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs9824878	1.00[CEU][hapmap]
rs9824909	1.00[CEU][hapmap]
rs9825758	0.89[EUR][1000 genomes]
rs9828350	1.00[CEU][hapmap]
rs9829960	1.00[CEU][hapmap]
rs9830630	1.00[CEU][hapmap]
rs9830762	1.00[CEU][hapmap]
rs9837508	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9845052	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs9846504	1.00[CEU][hapmap]
rs9847210	0.81[EUR][1000 genomes]
rs9856754	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs9866277	1.00[CEU][hapmap]
rs9874892	0.98[EUR][1000 genomes]
rs9876425	0.81[ASN][1000 genomes]
rs9880964	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9881057	0.98[EUR][1000 genomes]
rs9881372	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877111	chr3:85892098-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
3	nsv470727	chr3:85917289-86044224	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv590913	chr3:85917289-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86028000-86043000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:86040400-86064000	Weak transcription	Brain Hippocampus Middle	brain

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