Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11922573	0.91[EUR][1000 genomes]
rs11924652	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13319689	0.89[EUR][1000 genomes]
rs13323149	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17024876	0.94[ASN][1000 genomes]
rs28708559	0.89[EUR][1000 genomes]
rs28847694	0.86[EUR][1000 genomes]
rs28847736	0.85[EUR][1000 genomes]
rs35215849	0.89[EUR][1000 genomes]
rs35684639	0.89[EUR][1000 genomes]
rs4443171	0.87[EUR][1000 genomes]
rs6771277	0.90[EUR][1000 genomes]
rs6782241	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6785190	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6806454	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7613116	0.90[EUR][1000 genomes]
rs7619493	0.90[EUR][1000 genomes]
rs7630558	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9310001	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9810010	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9810027	0.90[EUR][1000 genomes]
rs9812581	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9837508	0.87[EUR][1000 genomes]
rs9842732	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9845052	0.90[EUR][1000 genomes]
rs9847210	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9874892	0.91[EUR][1000 genomes]
rs9878268	0.86[ASN][1000 genomes]
rs9880964	0.86[EUR][1000 genomes]
rs9881057	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86040400-86064000	Weak transcription	Brain Hippocampus Middle	brain

Quick Search: