Variant report

Variant	rs11924652
Chromosome Location	chr3:86088747-86088748
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11922573	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12629011	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12714646	0.87[EUR][1000 genomes]
rs13061466	0.87[EUR][1000 genomes]
rs13319689	0.97[EUR][1000 genomes]
rs13327074	0.83[EUR][1000 genomes]
rs2324974	0.83[EUR][1000 genomes]
rs28699216	0.97[ASN][1000 genomes]
rs28708559	0.97[EUR][1000 genomes]
rs28847694	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28847736	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35215849	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35684639	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4443171	0.95[EUR][1000 genomes]
rs6771277	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6782241	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6785190	0.85[EUR][1000 genomes]
rs6806454	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7613116	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7619493	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7630558	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7638804	0.86[EUR][1000 genomes]
rs9810010	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9810027	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9812581	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9816329	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9825758	0.86[EUR][1000 genomes]
rs9837508	0.95[EUR][1000 genomes]
rs9838412	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9845052	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9847210	0.84[EUR][1000 genomes]
rs9874892	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9880964	0.94[EUR][1000 genomes]
rs9881057	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86088400-86089200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
2	chr3:86088600-86089000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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