Variant report

Variant	rs28699216
Chromosome Location	chr3:86118771-86118772
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11924652	0.97[ASN][1000 genomes]
rs13323149	0.83[AMR][1000 genomes]
rs17024876	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2324979	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2324980	0.81[ASN][1000 genomes]
rs28847694	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28847736	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6782241	0.90[ASN][1000 genomes]
rs6785190	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6806454	0.90[ASN][1000 genomes]
rs7630558	0.92[ASN][1000 genomes]
rs9310001	0.93[EUR][1000 genomes]
rs9816329	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9838412	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9842732	0.94[EUR][1000 genomes]
rs9847210	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86111000-86119600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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