Variant report
| Variant | rs2324980 |
|---|---|
| Chromosome Location | chr3:86119577-86119578 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CHMP2B-5 | chr3:86118793-86122014 | NONHSAT090663 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11914992 | 1.00[CHB][hapmap];0.93[JPT][hapmap] |
| rs11922573 | 0.89[ASN][1000 genomes] |
| rs2324979 | 1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs28699216 | 0.81[ASN][1000 genomes] |
| rs28847694 | 0.99[ASN][1000 genomes] |
| rs28847736 | 0.99[ASN][1000 genomes] |
| rs35215849 | 0.89[CHB][hapmap];0.91[ASN][1000 genomes] |
| rs35684639 | 0.92[ASN][1000 genomes] |
| rs4443171 | 0.81[CHD][hapmap] |
| rs6763449 | 0.88[ASN][1000 genomes] |
| rs6770718 | 0.88[ASN][1000 genomes] |
| rs6771277 | 0.91[ASN][1000 genomes] |
| rs6782241 | 0.81[JPT][hapmap] |
| rs6801296 | 0.94[CHB][hapmap];0.93[JPT][hapmap] |
| rs6805498 | 1.00[CHB][hapmap];0.93[JPT][hapmap] |
| rs7613116 | 0.90[ASN][1000 genomes] |
| rs7619493 | 1.00[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs7630558 | 0.84[CHB][hapmap];0.83[CHD][hapmap] |
| rs7634457 | 1.00[CHB][hapmap];0.93[JPT][hapmap] |
| rs9810027 | 0.91[ASN][1000 genomes] |
| rs9816329 | 0.84[CHB][hapmap];0.81[CHD][hapmap];0.81[ASN][1000 genomes] |
| rs9824909 | 0.81[JPT][hapmap] |
| rs9828350 | 0.81[CHD][hapmap];0.81[JPT][hapmap] |
| rs9830762 | 1.00[CHB][hapmap];0.93[JPT][hapmap] |
| rs9838412 | 0.84[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs9845052 | 1.00[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs9846504 | 0.81[JPT][hapmap] |
| rs9858754 | 0.92[ASN][1000 genomes] |
| rs9866277 | 0.83[CHD][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap] |
| rs9874892 | 0.91[ASN][1000 genomes] |
| rs9881057 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:86111000-86119600 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
