Variant report

Variant	rs9858754
Chromosome Location	chr3:86174612-86174613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11922573	0.81[ASN][1000 genomes]
rs2324979	0.91[ASN][1000 genomes]
rs2324980	0.92[ASN][1000 genomes]
rs28847694	0.91[ASN][1000 genomes]
rs28847736	0.91[ASN][1000 genomes]
rs35215849	0.82[ASN][1000 genomes]
rs35684639	0.84[ASN][1000 genomes]
rs4688880	0.81[EUR][1000 genomes]
rs6763449	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6770718	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6771277	0.82[ASN][1000 genomes]
rs7613116	0.81[ASN][1000 genomes]
rs7619493	0.81[ASN][1000 genomes]
rs9809144	0.80[EUR][1000 genomes]
rs9810027	0.82[ASN][1000 genomes]
rs9845052	0.81[ASN][1000 genomes]
rs9874892	0.82[ASN][1000 genomes]
rs9881057	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86174600-86175800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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