Variant report

Variant	rs9809144
Chromosome Location	chr3:86185002-86185003
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11914992	0.84[CHB][hapmap]
rs12494510	0.83[ASN][1000 genomes]
rs2324979	0.84[CHB][hapmap]
rs2324980	0.84[CHB][hapmap]
rs4688880	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6763449	0.80[EUR][1000 genomes]
rs6770718	0.80[EUR][1000 genomes]
rs6805498	0.84[CHB][hapmap]
rs7619493	0.84[CHB][hapmap]
rs7634457	0.84[CHB][hapmap]
rs9310001	0.81[CHB][hapmap]
rs9830762	0.84[CHB][hapmap]
rs9842732	0.81[CHB][hapmap]
rs9845052	0.84[CHB][hapmap]
rs9858754	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv428089	chr3:86183922-86217535	Enhancers Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86185000-86185200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:86185000-86185200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:86185000-86186600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links