Variant report

Variant	rs6770718
Chromosome Location	chr3:86193006-86193007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11914992	0.94[CHB][hapmap]
rs2324979	0.94[CHB][hapmap];0.81[CHD][hapmap];0.87[ASN][1000 genomes]
rs2324980	0.94[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];0.87[MKK][hapmap];0.88[ASN][1000 genomes]
rs28847694	0.87[ASN][1000 genomes]
rs28847736	0.87[ASN][1000 genomes]
rs35215849	0.83[CHB][hapmap]
rs4688880	0.81[EUR][1000 genomes]
rs6763449	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6801296	0.89[CHB][hapmap]
rs6805498	0.94[CHB][hapmap]
rs7430852	0.80[CEU][hapmap]
rs7619493	0.94[CHB][hapmap];0.81[CHD][hapmap]
rs7634457	0.94[CHB][hapmap]
rs9809144	0.80[EUR][1000 genomes]
rs9830762	0.94[CHB][hapmap]
rs9845052	0.94[CHB][hapmap];0.81[CHD][hapmap]
rs9858754	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv428089	chr3:86183922-86217535	Enhancers Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86185200-86195200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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