Variant report

Variant	rs9816329
Chromosome Location	chr3:86115541-86115542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11914992	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs11924652	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13316470	0.92[CEU][hapmap];0.84[CHB][hapmap]
rs17024876	0.93[EUR][1000 genomes]
rs2324974	0.85[GIH][hapmap]
rs2324979	0.89[ASW][hapmap];0.93[CEU][hapmap];0.84[CHB][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.82[LWK][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2324980	0.84[CHB][hapmap];0.81[CHD][hapmap];0.81[ASN][1000 genomes]
rs28699216	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28847694	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28847736	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35215849	0.80[GIH][hapmap];0.81[AMR][1000 genomes]
rs6771277	0.81[AMR][1000 genomes]
rs6782241	0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6785190	0.82[EUR][1000 genomes]
rs6801296	0.82[JPT][hapmap]
rs6805498	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs6806454	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7619493	0.84[CHB][hapmap];0.83[CHD][hapmap];0.97[GIH][hapmap]
rs7630558	0.94[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.84[LWK][hapmap];0.91[YRI][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7634457	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs9310001	0.93[CEU][hapmap];0.81[CHB][hapmap];0.94[GIH][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9810027	0.81[AMR][1000 genomes]
rs9824909	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs9828350	0.95[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap]
rs9829960	0.80[CHB][hapmap];0.91[GIH][hapmap]
rs9830762	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs9838412	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9842732	0.93[CEU][hapmap];0.81[CHB][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9845052	0.84[CHB][hapmap];0.83[CHD][hapmap];0.97[GIH][hapmap]
rs9846504	0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap]
rs9847210	0.81[EUR][1000 genomes]
rs9861174	0.82[GIH][hapmap]
rs9866277	0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap]
rs9874892	0.81[AMR][1000 genomes]
rs9881057	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86111000-86119600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:86115000-86117200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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