Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VGLL3-4	chr3:86041333-86043864	ENSG00000239519.1

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11922573	0.87[EUR][1000 genomes]
rs11924652	0.86[EUR][1000 genomes]
rs12714646	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13061466	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13319689	0.89[EUR][1000 genomes]
rs13327074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28708559	0.89[EUR][1000 genomes]
rs28847736	0.80[EUR][1000 genomes]
rs35215849	0.85[EUR][1000 genomes]
rs35684639	0.85[EUR][1000 genomes]
rs4443171	0.87[EUR][1000 genomes]
rs6771277	0.87[EUR][1000 genomes]
rs6782241	0.86[EUR][1000 genomes]
rs6806454	0.86[EUR][1000 genomes]
rs7428746	0.85[AMR][1000 genomes]
rs7613116	0.87[EUR][1000 genomes]
rs7619493	0.87[EUR][1000 genomes]
rs7630558	0.86[EUR][1000 genomes]
rs7638804	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9810027	0.86[EUR][1000 genomes]
rs9837508	0.87[EUR][1000 genomes]
rs9845052	0.87[EUR][1000 genomes]
rs9874892	0.87[EUR][1000 genomes]
rs9880964	0.85[EUR][1000 genomes]
rs9881057	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877111	chr3:85892098-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
3	nsv470727	chr3:85917289-86044224	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv590913	chr3:85917289-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86028000-86043000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:86040400-86064000	Weak transcription	Brain Hippocampus Middle	brain

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