Variant report

Variant	rs11922904
Chromosome Location	chr3:86082200-86082201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11914992	1.00[CEU][hapmap]
rs11922573	0.92[EUR][1000 genomes]
rs11924652	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12629011	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12714646	0.81[EUR][1000 genomes]
rs13061466	0.81[EUR][1000 genomes]
rs13316470	0.81[CHB][hapmap]
rs13319689	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs13323149	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13327074	0.89[CEU][hapmap]
rs17024876	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28708559	0.90[EUR][1000 genomes]
rs2875497	1.00[CEU][hapmap];0.86[YRI][hapmap]
rs28847694	0.87[EUR][1000 genomes]
rs28847736	0.86[EUR][1000 genomes]
rs35215849	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs35684639	0.90[EUR][1000 genomes]
rs4443171	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs6771277	0.91[EUR][1000 genomes]
rs6782241	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6785190	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6801296	1.00[CEU][hapmap]
rs6805498	1.00[CEU][hapmap]
rs6806454	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7613116	0.91[EUR][1000 genomes]
rs7619493	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7630558	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7630657	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs7634457	1.00[CEU][hapmap]
rs7638804	0.89[CEU][hapmap]
rs9310001	0.83[CHB][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9810010	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9810027	0.91[EUR][1000 genomes]
rs9812581	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9824878	1.00[CEU][hapmap]
rs9824909	1.00[CEU][hapmap]
rs9828350	1.00[CEU][hapmap]
rs9829960	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs9830630	1.00[CEU][hapmap];0.87[YRI][hapmap]
rs9830762	1.00[CEU][hapmap]
rs9837508	0.88[EUR][1000 genomes]
rs9838412	0.81[CHB][hapmap]
rs9842732	0.83[CHB][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9845052	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9846504	1.00[CEU][hapmap]
rs9847210	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9866277	1.00[CEU][hapmap]
rs9874892	0.92[EUR][1000 genomes]
rs9878268	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9880964	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs9881057	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	esv3331531	chr3:86080562-86084960	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a
4	esv3337065	chr3:86082062-86084010	Inactive region	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links