Variant report

Variant	rs2875497
Chromosome Location	chr3:86095226-86095227
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11914992	1.00[CEU][hapmap]
rs11922573	0.86[EUR][1000 genomes]
rs11922904	1.00[CEU][hapmap];0.86[YRI][hapmap]
rs11924652	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12629011	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13316470	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13319689	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs13323149	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17024876	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28708559	0.84[EUR][1000 genomes]
rs28847694	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28847736	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35215849	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs35684639	0.84[EUR][1000 genomes]
rs4443171	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs6771277	0.85[EUR][1000 genomes]
rs6782241	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6785190	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6801296	1.00[CEU][hapmap]
rs6805498	1.00[CEU][hapmap]
rs6806454	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7613116	0.85[EUR][1000 genomes]
rs7619493	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7630558	1.00[CEU][hapmap];0.80[CHB][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7630657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7634457	1.00[CEU][hapmap]
rs9310001	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9810010	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9810027	0.85[EUR][1000 genomes]
rs9812581	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9824878	1.00[CEU][hapmap]
rs9824909	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs9828350	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs9829960	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs9830630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9830762	1.00[CEU][hapmap]
rs9837508	0.83[EUR][1000 genomes]
rs9842732	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9845052	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs9846504	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs9847210	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9862608	0.82[CHB][hapmap]
rs9866277	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs9874892	0.86[EUR][1000 genomes]
rs9878268	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9880964	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs9881057	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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