Variant report

Variant	rs9862608
Chromosome Location	chr3:86041881-86041882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11924652	0.81[EUR][1000 genomes]
rs12629011	0.86[EUR][1000 genomes]
rs13316470	0.85[CEU][hapmap];0.84[CHB][hapmap]
rs13319689	0.82[EUR][1000 genomes]
rs13323149	0.88[EUR][1000 genomes]
rs17024876	0.84[EUR][1000 genomes]
rs2324979	0.85[CEU][hapmap]
rs28708559	0.82[EUR][1000 genomes]
rs2875497	0.82[CHB][hapmap]
rs6771277	0.81[EUR][1000 genomes]
rs6782241	0.81[EUR][1000 genomes]
rs6785190	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7613116	0.81[EUR][1000 genomes]
rs7619493	0.81[EUR][1000 genomes]
rs7630558	0.81[EUR][1000 genomes]
rs7630657	0.82[CHB][hapmap]
rs9310001	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs9810010	0.86[EUR][1000 genomes]
rs9812581	0.84[EUR][1000 genomes]
rs9829960	0.85[CHB][hapmap]
rs9830630	0.82[CHB][hapmap]
rs9838412	0.84[CEU][hapmap]
rs9842732	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs9845052	0.81[EUR][1000 genomes]
rs9847210	0.95[EUR][1000 genomes]
rs9861174	0.89[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877111	chr3:85892098-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
3	nsv470727	chr3:85917289-86044224	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv590913	chr3:85917289-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86028000-86043000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:86040400-86064000	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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