Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11914992	0.88[CEU][hapmap]
rs11922904	1.00[CEU][hapmap]
rs12714646	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13061466	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13319689	0.88[CEU][hapmap]
rs13325775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13327074	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs2875497	0.87[CEU][hapmap]
rs35215849	0.88[CEU][hapmap]
rs35356576	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35975955	0.92[AMR][1000 genomes]
rs4443171	0.86[CEU][hapmap]
rs6782241	0.88[CEU][hapmap]
rs6801296	0.87[CEU][hapmap]
rs6805498	0.88[CEU][hapmap]
rs7619493	0.88[CEU][hapmap]
rs7630558	0.88[CEU][hapmap]
rs7630657	0.88[CEU][hapmap]
rs7634457	0.88[CEU][hapmap]
rs7638804	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs9309995	1.00[YRI][hapmap]
rs9824878	0.88[CEU][hapmap]
rs9824909	0.88[CEU][hapmap]
rs9828350	0.88[CEU][hapmap]
rs9829960	0.88[CEU][hapmap]
rs9830630	0.88[CEU][hapmap]
rs9830762	0.88[CEU][hapmap]
rs9845052	0.88[CEU][hapmap]
rs9846504	0.88[CEU][hapmap]
rs9853144	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9860993	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9866277	0.88[CEU][hapmap]
rs9877300	1.00[YRI][hapmap]
rs9877447	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86136400-86137200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:86136400-86137400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:86136600-86137000	Enhancers	Fetal Brain Male	brain
4	chr3:86136600-86137000	Active TSS	Rectal Mucosa Donor 29	rectum

Quick Search: