Variant report

Variant	rs9853144
Chromosome Location	chr3:86173480-86173481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11710933	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11914992	0.89[CEU][hapmap]
rs11922904	1.00[CEU][hapmap]
rs13319689	0.89[CEU][hapmap]
rs13325775	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13327074	0.88[CEU][hapmap]
rs2875497	0.88[CEU][hapmap]
rs35215849	0.89[CEU][hapmap]
rs35356576	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4305417	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4443171	0.88[CEU][hapmap]
rs6782241	0.89[CEU][hapmap]
rs6801296	0.88[CEU][hapmap]
rs6805498	0.89[CEU][hapmap]
rs7619493	0.89[CEU][hapmap]
rs7630558	0.89[CEU][hapmap]
rs7630657	0.89[CEU][hapmap]
rs7634457	0.89[CEU][hapmap]
rs7638804	0.88[CEU][hapmap]
rs9824878	0.89[CEU][hapmap]
rs9824909	0.89[CEU][hapmap]
rs9828350	0.89[CEU][hapmap]
rs9829960	0.89[CEU][hapmap]
rs9830630	0.89[CEU][hapmap]
rs9830762	0.89[CEU][hapmap]
rs9845052	0.89[CEU][hapmap]
rs9846504	0.89[CEU][hapmap]
rs9860993	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9866277	0.89[CEU][hapmap]
rs9877447	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9880964	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86173400-86174600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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