Variant report

Variant	rs11915709
Chromosome Location	chr3:67658341-67658342
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11914829	1.00[AFR][1000 genomes]
rs17046684	0.80[AFR][1000 genomes]
rs72929346	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv460700	chr3:67393629-67712970	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv590560	chr3:67393629-67712970	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv590561	chr3:67548852-67690626	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3359258	chr3:67589615-67828274	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv876922	chr3:67635506-67755257	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv428739	chr3:67656829-67730379	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67601800-67673000	Weak transcription	Fetal Heart	heart
2	chr3:67612400-67697200	Weak transcription	Hela-S3	cervix
3	chr3:67614000-67658600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:67629200-67675000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:67631400-67700200	Weak transcription	K562	blood
6	chr3:67631800-67664600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:67639000-67662000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:67639200-67658600	Weak transcription	Colonic Mucosa	Colon
9	chr3:67640200-67678000	Weak transcription	Small Intestine	intestine
10	chr3:67640400-67658600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:67642800-67658400	Weak transcription	HSMMtube	muscle
12	chr3:67644600-67658600	Weak transcription	Esophagus	oesophagus
13	chr3:67646200-67667400	Weak transcription	Psoas Muscle	Psoas
14	chr3:67647600-67658800	Weak transcription	HepG2	liver
15	chr3:67651200-67664800	Weak transcription	Colon Smooth Muscle	Colon
16	chr3:67653400-67658400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr3:67653400-67658600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:67653400-67660200	Strong transcription	HSMM	muscle
19	chr3:67653400-67662200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr3:67653400-67669800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr3:67653600-67661600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:67653600-67664600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr3:67653800-67659800	Strong transcription	HMEC	breast
24	chr3:67653800-67660400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr3:67653800-67671200	Weak transcription	Stomach Mucosa	stomach
26	chr3:67653800-67679600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr3:67654000-67661600	Strong transcription	Primary B cells from peripheral blood	blood
28	chr3:67654400-67661200	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr3:67654400-67661400	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr3:67654400-67661400	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr3:67654600-67661600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:67654600-67661800	Strong transcription	Primary B cells from cord blood	blood
33	chr3:67654800-67659800	Strong transcription	Fetal Kidney	kidney
34	chr3:67654800-67660200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr3:67654800-67660400	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr3:67654800-67661400	Strong transcription	Duodenum Mucosa	Duodenum
37	chr3:67655000-67659800	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr3:67655000-67660000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr3:67655000-67660000	Strong transcription	Adipose Nuclei	Adipose
40	chr3:67655000-67661400	Strong transcription	Fetal Lung	lung
41	chr3:67655000-67661600	Strong transcription	Liver	Liver
42	chr3:67655000-67662000	Strong transcription	Dnd41	blood
43	chr3:67655200-67660000	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr3:67655400-67660200	Strong transcription	Fetal Intestine Large	intestine
45	chr3:67655400-67660600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr3:67655400-67661400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr3:67655600-67661000	Strong transcription	GM12878-XiMat	blood
48	chr3:67655800-67665000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr3:67656000-67658400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr3:67656000-67658600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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