Variant report

Variant	rs17046684
Chromosome Location	chr3:67643561-67643562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11127716	1.00[AMR][1000 genomes]
rs11127717	1.00[AMR][1000 genomes]
rs11914829	0.80[AFR][1000 genomes]
rs11915709	0.80[AFR][1000 genomes]
rs11922408	1.00[AMR][1000 genomes]
rs11924268	0.90[AFR][1000 genomes]
rs17046689	0.94[AFR][1000 genomes]
rs17046856	1.00[AMR][1000 genomes]
rs2885692	0.86[AFR][1000 genomes]
rs57450793	0.90[AFR][1000 genomes]
rs60283689	0.90[AFR][1000 genomes]
rs72917975	1.00[AMR][1000 genomes]
rs72917977	1.00[AMR][1000 genomes]
rs72918956	1.00[AMR][1000 genomes]
rs72919762	1.00[AMR][1000 genomes]
rs72919766	1.00[AMR][1000 genomes]
rs72919767	1.00[AMR][1000 genomes]
rs72929333	0.86[AFR][1000 genomes]
rs72929346	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv460700	chr3:67393629-67712970	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv590560	chr3:67393629-67712970	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv590561	chr3:67548852-67690626	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3359258	chr3:67589615-67828274	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv876922	chr3:67635506-67755257	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv3526368	chr3:67643545-67643893	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv3526369	chr3:67643560-67643904	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67579400-67657600	Weak transcription	Pancreas	Pancrea
2	chr3:67598000-67644200	Weak transcription	NHLF	lung
3	chr3:67601800-67673000	Weak transcription	Fetal Heart	heart
4	chr3:67602200-67644200	Weak transcription	Gastric	stomach
5	chr3:67602200-67654800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr3:67602200-67655400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:67602200-67656000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:67602400-67646200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr3:67609400-67644000	Weak transcription	NHDF-Ad	bronchial
10	chr3:67612400-67697200	Weak transcription	Hela-S3	cervix
11	chr3:67614000-67658600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr3:67616600-67644200	Weak transcription	HSMM	muscle
13	chr3:67618600-67655600	Weak transcription	NH-A	brain
14	chr3:67621200-67644200	Weak transcription	Esophagus	oesophagus
15	chr3:67621200-67657600	Weak transcription	Fetal Stomach	stomach
16	chr3:67621400-67650400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr3:67621800-67644000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:67621800-67658000	Weak transcription	Thymus	Thymus
19	chr3:67622000-67648800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr3:67622200-67657400	Weak transcription	Brain Substantia Nigra	brain
21	chr3:67622400-67647800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:67622600-67644400	Weak transcription	HMEC	breast
23	chr3:67622800-67644000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:67623400-67650000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr3:67624400-67643800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:67624400-67649200	Weak transcription	Fetal Intestine Large	intestine
27	chr3:67624800-67643800	Weak transcription	Dnd41	blood
28	chr3:67624800-67649200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:67624800-67651000	Weak transcription	Adipose Nuclei	Adipose
30	chr3:67624800-67658200	Weak transcription	Fetal Intestine Small	intestine
31	chr3:67627200-67655400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr3:67627600-67649000	Weak transcription	NHEK	skin
33	chr3:67628400-67655000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr3:67629200-67654800	Weak transcription	Fetal Kidney	kidney
35	chr3:67629200-67675000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr3:67629400-67644000	Weak transcription	Right Atrium	heart
37	chr3:67629400-67645600	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr3:67629400-67648800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr3:67629400-67649200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr3:67629400-67649400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:67629400-67658000	Weak transcription	Right Ventricle	heart
42	chr3:67629600-67655600	Weak transcription	HUVEC	blood vessel
43	chr3:67630200-67644000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr3:67631400-67700200	Weak transcription	K562	blood
45	chr3:67631800-67664600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr3:67634200-67644000	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr3:67634600-67644000	Weak transcription	Osteobl	bone
48	chr3:67634800-67649200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr3:67635200-67644200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr3:67635200-67646800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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