Variant report

Variant	rs11922408
Chromosome Location	chr3:67757923-67757924
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11127716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11127717	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17046684	1.00[AMR][1000 genomes]
rs17046856	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72917969	0.84[AFR][1000 genomes]
rs72917975	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72917977	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72919762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72919766	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72919767	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72919772	0.80[AFR][1000 genomes]
rs72929346	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470638	chr3:67367341-67814738	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3359258	chr3:67589615-67828274	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:67705800-67776000	Weak transcription	Ovary	ovary
2	chr3:67721200-67759200	Weak transcription	Psoas Muscle	Psoas
3	chr3:67721400-67800400	Weak transcription	Left Ventricle	heart
4	chr3:67754200-67763400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:67755000-67765600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:67756800-67758000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:67757000-67758400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:67757200-67758000	Enhancers	Brain Angular Gyrus	brain
9	chr3:67757200-67758000	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr3:67757200-67758000	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr3:67757200-67758000	Enhancers	HepG2	liver
12	chr3:67757200-67758400	Enhancers	Fetal Intestine Large	intestine
13	chr3:67757400-67758000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:67757400-67758000	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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