Variant report

Variant	rs11916107
Chromosome Location	chr3:151002788-151002789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16863273	1.00[TSI][hapmap]
rs2276761	1.00[CHD][hapmap]
rs7624011	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150983000-151011000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:150984400-151022400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:150984600-151003600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:150984600-151003600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:150994600-151003600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:150999400-151011200	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr3:151000400-151002800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:151000600-151002800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr3:151001000-151002800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:151001000-151002800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:151001000-151003000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr3:151001000-151003000	Enhancers	Dnd41	blood
13	chr3:151001200-151002800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr3:151002000-151010600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:151002000-151012000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:151002200-151002800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:151002200-151004000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:151002200-151009600	Weak transcription	HMEC	breast
19	chr3:151002200-151010800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:151002400-151002800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr3:151002400-151018000	Weak transcription	NHLF	lung
22	chr3:151002600-151003600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr3:151002600-151044000	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links