Variant report

Variant	rs16863273
Chromosome Location	chr3:150945370-150945371
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150945162..150946781-chr3:151000301..151001339,9	K562	blood:
2	chr3:150945207..150946162-chr3:151045062..151046047,6	K562	blood:
3	chr3:150945248..150946199-chr3:151000415..151001358,11	MCF-7	breast:
4	chr3:150945314..150946018-chr3:151000542..151001496,4	MCF-7	breast:
5	chr3:150945296..150946248-chr3:150999366..150999969,2	MCF-7	breast:
6	chr3:150945279..150946102-chr3:151045158..151045936,2	MCF-7	breast:
7	chr3:150945195..150946190-chr3:151556389..151557005,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11916107	1.00[TSI][hapmap]
rs73155796	1.00[AFR][1000 genomes]
rs9856118	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150878000-150946000	Weak transcription	Placenta	Placenta
2	chr3:150928800-150946200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:150928800-150952800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:150928800-150953000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:150929200-150945400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:150932600-150946200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:150935400-150946200	Weak transcription	Aorta	Aorta
8	chr3:150935600-150945400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr3:150938200-150945800	Weak transcription	Fetal Heart	heart
10	chr3:150938600-150948600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:150940000-150945400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:150940000-150945400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr3:150940000-150945400	Weak transcription	Fetal Intestine Small	intestine
14	chr3:150940400-150945800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:150941600-150948000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr3:150941800-150945400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:150942000-150946800	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr3:150942200-150946000	Enhancers	Liver	Liver
19	chr3:150942200-150947000	Enhancers	Primary T cells from cord blood	blood
20	chr3:150942200-150948600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:150942800-150945400	Enhancers	NH-A	brain
22	chr3:150942800-150946600	Enhancers	Primary T cells fromperipheralblood	blood
23	chr3:150942800-150947000	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr3:150943000-150946800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:150943000-150947800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr3:150943200-150946600	Enhancers	Fetal Thymus	thymus
27	chr3:150943200-150948600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr3:150943400-150945800	Enhancers	A549	lung
29	chr3:150943600-150945400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr3:150943600-150945400	Enhancers	HepG2	liver
31	chr3:150943600-150946000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr3:150943600-150946600	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr3:150943600-150946600	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr3:150943800-150945400	Weak transcription	Adipose Nuclei	Adipose
35	chr3:150943800-150945400	Enhancers	Stomach Smooth Muscle	stomach
36	chr3:150943800-150945400	Enhancers	NHEK	skin
37	chr3:150943800-150945800	Enhancers	Osteobl	bone
38	chr3:150943800-150946000	Enhancers	Duodenum Mucosa	Duodenum
39	chr3:150943800-150946400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr3:150943800-150946600	Enhancers	NHDF-Ad	bronchial
41	chr3:150943800-150946800	Enhancers	Fetal Lung	lung
42	chr3:150943800-150946800	Enhancers	HMEC	breast
43	chr3:150943800-150947000	Enhancers	Muscle Satellite Cultured Cells	--
44	chr3:150943800-150947000	Enhancers	NHLF	lung
45	chr3:150943800-150947200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr3:150943800-150947600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:150944000-150946600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr3:150944000-150946800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr3:150944000-150946800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr3:150944000-150946800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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