Variant report

Variant	rs11917076
Chromosome Location	chr3:121458079-121458080
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:121457648..121460284-chr3:121467145..121470013,4	K562	blood:
2	chr3:121457664..121460185-chr3:121469014..121471399,2	MCF-7	breast:
3	chr3:121447927..121450060-chr3:121456793..121458393,2	K562	blood:
4	chr3:121456187..121459032-chr3:121465141..121468523,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173230	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1919555	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591395	chr3:120970900-121501070	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv591396	chr3:120970900-121557533	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv591397	chr3:120977383-121505882	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv432480	chr3:121355723-121629928	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv432482	chr3:121364236-121629634	Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv432481	chr3:121364236-121637178	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv829703	chr3:121383290-121534493	Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
8	nsv516233	chr3:121419301-121670405	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:121436600-121466600	Weak transcription	Stomach Mucosa	stomach
2	chr3:121439400-121467200	Weak transcription	Small Intestine	intestine
3	chr3:121443400-121464800	Weak transcription	Fetal Brain Male	brain
4	chr3:121444600-121466400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:121444800-121458800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr3:121444800-121458800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:121444800-121466400	Weak transcription	Colonic Mucosa	Colon
8	chr3:121444800-121467200	Weak transcription	Aorta	Aorta
9	chr3:121444800-121467400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:121444800-121467400	Weak transcription	Spleen	Spleen
11	chr3:121445200-121466200	Weak transcription	Fetal Intestine Small	intestine
12	chr3:121445200-121466800	Weak transcription	Thymus	Thymus
13	chr3:121445200-121467400	Weak transcription	Esophagus	oesophagus
14	chr3:121445800-121467000	Weak transcription	Fetal Stomach	stomach
15	chr3:121445800-121467400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:121447600-121467000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr3:121447800-121466400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr3:121447800-121467000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr3:121448000-121466400	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:121448000-121466400	Weak transcription	Fetal Kidney	kidney
21	chr3:121448200-121458400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr3:121448200-121458800	Weak transcription	Dnd41	blood
23	chr3:121448200-121466600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr3:121448400-121466400	Weak transcription	HSMM	muscle
25	chr3:121448400-121466800	Weak transcription	Hela-S3	cervix
26	chr3:121448600-121458800	Weak transcription	Adipose Nuclei	Adipose
27	chr3:121448600-121466400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:121448800-121458800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr3:121448800-121459200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr3:121448800-121460000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr3:121448800-121460400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr3:121448800-121463600	Weak transcription	Ovary	ovary
33	chr3:121448800-121464600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr3:121448800-121465600	Weak transcription	HUVEC	blood vessel
35	chr3:121448800-121466400	Weak transcription	Fetal Lung	lung
36	chr3:121448800-121466400	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr3:121448800-121466800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr3:121448800-121467400	Weak transcription	Fetal Muscle Trunk	muscle
39	chr3:121448800-121467400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr3:121449000-121458800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr3:121449000-121464800	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr3:121449000-121466400	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr3:121449000-121466400	Weak transcription	HepG2	liver
44	chr3:121449000-121466800	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr3:121449000-121467200	Weak transcription	Primary B cells from peripheral blood	blood
46	chr3:121449000-121467200	Weak transcription	Fetal Thymus	thymus
47	chr3:121449200-121459200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr3:121449600-121464800	Weak transcription	Liver	Liver
49	chr3:121449600-121466400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr3:121449600-121466800	Weak transcription	Primary B cells from cord blood	blood

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