Variant report

Variant	rs11917211
Chromosome Location	chr3:179426582-179426583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10428102	1.00[AFR][1000 genomes]
rs10428192	0.88[AFR][1000 genomes]
rs11918784	1.00[LWK][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes]
rs11919544	0.88[AFR][1000 genomes]
rs6776063	0.82[YRI][hapmap];0.88[AFR][1000 genomes]
rs6785328	0.81[LWK][hapmap]
rs9865925	0.90[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4140	chr3:179383961-179429704	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179384800-179428400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:179384800-179443800	Weak transcription	Esophagus	oesophagus
3	chr3:179385000-179439200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:179385000-179448400	Weak transcription	Fetal Brain Male	brain
5	chr3:179391000-179444000	Weak transcription	Pancreas	Pancrea
6	chr3:179391000-179452200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:179391400-179439200	Weak transcription	NHEK	skin
8	chr3:179397800-179439200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr3:179399000-179434000	Weak transcription	A549	lung
10	chr3:179399000-179459800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr3:179400800-179426800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:179402600-179428600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr3:179404400-179426600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:179404800-179426600	Weak transcription	GM12878-XiMat	blood
15	chr3:179405800-179429200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:179406200-179503000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr3:179406600-179449400	Weak transcription	Spleen	Spleen
18	chr3:179407000-179426600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:179407000-179428400	Weak transcription	Osteobl	bone
20	chr3:179407000-179431200	Weak transcription	NH-A	brain
21	chr3:179407200-179430800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr3:179407800-179439200	Weak transcription	Brain Angular Gyrus	brain
23	chr3:179408200-179439800	Weak transcription	Colon Smooth Muscle	Colon
24	chr3:179408600-179439400	Weak transcription	Fetal Thymus	thymus
25	chr3:179414000-179428400	Weak transcription	Adipose Nuclei	Adipose
26	chr3:179415800-179426800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr3:179416200-179448400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr3:179416400-179428200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr3:179419000-179439200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr3:179419200-179426600	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr3:179419200-179430000	Strong transcription	Primary T cells from cord blood	blood
32	chr3:179419400-179426600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:179419400-179439000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr3:179419600-179444000	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr3:179419800-179426600	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr3:179420200-179478800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr3:179420600-179426600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr3:179421600-179426600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr3:179421600-179426800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr3:179422400-179439200	Weak transcription	Brain Hippocampus Middle	brain
41	chr3:179422800-179460600	Weak transcription	Duodenum Mucosa	Duodenum
42	chr3:179423000-179436800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr3:179423000-179439200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr3:179423200-179427000	Strong transcription	Fetal Stomach	stomach
45	chr3:179423200-179427200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr3:179423400-179448200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr3:179423400-179448400	Weak transcription	Gastric	stomach
48	chr3:179423800-179430000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr3:179424000-179427200	Strong transcription	Hela-S3	cervix
50	chr3:179424000-179427400	Strong transcription	HepG2	liver

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