Variant report

Variant	rs9865925
Chromosome Location	chr3:179427722-179427723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:179280406..179283122-chr3:179427442..179429884,2	K562	blood:

Variant related genes	Relation type
ENSG00000136518	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11917211	0.90[LWK][hapmap]
rs11918784	0.90[LWK][hapmap]
rs28495971	1.00[EUR][1000 genomes]
rs9835722	1.00[EUR][1000 genomes]
rs9842638	1.00[EUR][1000 genomes]
rs9843887	1.00[EUR][1000 genomes]
rs9849363	1.00[EUR][1000 genomes]
rs9852921	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9858077	1.00[EUR][1000 genomes]
rs9862659	1.00[EUR][1000 genomes]
rs9863739	1.00[EUR][1000 genomes]
rs9867929	1.00[EUR][1000 genomes]
rs9868366	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4140	chr3:179383961-179429704	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:179384800-179428400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:179384800-179443800	Weak transcription	Esophagus	oesophagus
3	chr3:179385000-179439200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:179385000-179448400	Weak transcription	Fetal Brain Male	brain
5	chr3:179391000-179444000	Weak transcription	Pancreas	Pancrea
6	chr3:179391000-179452200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:179391400-179439200	Weak transcription	NHEK	skin
8	chr3:179397800-179439200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr3:179399000-179434000	Weak transcription	A549	lung
10	chr3:179399000-179459800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr3:179402600-179428600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:179405800-179429200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr3:179406200-179503000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr3:179406600-179449400	Weak transcription	Spleen	Spleen
15	chr3:179407000-179428400	Weak transcription	Osteobl	bone
16	chr3:179407000-179431200	Weak transcription	NH-A	brain
17	chr3:179407200-179430800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr3:179407800-179439200	Weak transcription	Brain Angular Gyrus	brain
19	chr3:179408200-179439800	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:179408600-179439400	Weak transcription	Fetal Thymus	thymus
21	chr3:179414000-179428400	Weak transcription	Adipose Nuclei	Adipose
22	chr3:179416200-179448400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr3:179416400-179428200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:179419000-179439200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr3:179419200-179430000	Strong transcription	Primary T cells from cord blood	blood
26	chr3:179419400-179439000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr3:179419600-179444000	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr3:179420200-179478800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr3:179422400-179439200	Weak transcription	Brain Hippocampus Middle	brain
30	chr3:179422800-179460600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr3:179423000-179436800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr3:179423000-179439200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr3:179423400-179448200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr3:179423400-179448400	Weak transcription	Gastric	stomach
35	chr3:179423800-179430000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:179424000-179429000	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr3:179424000-179429800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr3:179424000-179474800	Weak transcription	Fetal Kidney	kidney
39	chr3:179424400-179487600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr3:179424600-179428800	Strong transcription	Primary B cells from cord blood	blood
41	chr3:179424600-179428800	Strong transcription	Primary B cells from peripheral blood	blood
42	chr3:179424600-179429800	Strong transcription	Fetal Muscle Trunk	muscle
43	chr3:179424600-179431000	Weak transcription	NHDF-Ad	bronchial
44	chr3:179424800-179428800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr3:179424800-179429000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:179424800-179429600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr3:179424800-179430000	Strong transcription	Dnd41	blood
48	chr3:179425000-179428800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
49	chr3:179425000-179429000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
50	chr3:179425000-179429400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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