The 2.0 version of rSNPBase

Variant report

Variant rs9843887
Chromosome Location chr3:179460298-179460299
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:179406200-179503000 Weak transcription Primary T regulatory cells fromperipheralblood blood
2 chr3:179420200-179478800 Weak transcription Rectal Smooth Muscle rectum
3 chr3:179422800-179460600 Weak transcription Duodenum Mucosa Duodenum
4 chr3:179424000-179474800 Weak transcription Fetal Kidney kidney
5 chr3:179424400-179487600 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr3:179429000-179466200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
7 chr3:179437400-179490200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
8 chr3:179437400-179501800 Weak transcription Pancreatic Islets Pancreatic Islet
9 chr3:179438400-179489200 Weak transcription ES-I3 Cell Line embryonic stem cell
10 chr3:179441000-179484200 Weak transcription Colon Smooth Muscle Colon
11 chr3:179441200-179460600 Weak transcription Brain Cingulate Gyrus brain
12 chr3:179444600-179461800 Weak transcription Primary monocytes fromperipheralblood blood
13 chr3:179444800-179462600 Weak transcription iPS-15b Cell Line embryonic stem cell
14 chr3:179446800-179465600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
15 chr3:179446800-179466400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr3:179447000-179465600 Strong transcription Fetal Muscle Trunk muscle
17 chr3:179449400-179503400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
18 chr3:179450000-179478400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
19 chr3:179450000-179484200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
20 chr3:179450000-179487200 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr3:179450200-179462400 Weak transcription Spleen Spleen
22 chr3:179450400-179474000 Weak transcription Placenta Placenta
23 chr3:179450400-179483200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
24 chr3:179450400-179491800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr3:179451200-179462000 Weak transcription Fetal Intestine Small intestine
26 chr3:179451800-179478800 Weak transcription Esophagus oesophagus
27 chr3:179452400-179462600 Weak transcription Fetal Brain Male brain
28 chr3:179452800-179460600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr3:179452800-179475000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr3:179452800-179478600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr3:179452800-179483000 Weak transcription A549 lung
32 chr3:179453000-179462200 Weak transcription Fetal Heart heart
33 chr3:179453000-179462200 Weak transcription HSMMtube muscle
34 chr3:179453200-179507600 Weak transcription NHEK skin
35 chr3:179453600-179463800 Strong transcription Fetal Muscle Leg muscle
36 chr3:179453800-179462400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
37 chr3:179455800-179461600 Strong transcription Fetal Brain Female brain
38 chr3:179455800-179463000 Strong transcription Fetal Stomach stomach
39 chr3:179455800-179463600 Strong transcription HUES64 Cell Line embryonic stem cell
40 chr3:179456200-179461000 Strong transcription Skeletal Muscle Female skeletal muscle
41 chr3:179456400-179462400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
42 chr3:179456400-179463200 Strong transcription Cortex derived primary cultured neurospheres brain
43 chr3:179457000-179460800 Strong transcription Primary T helper naive cells fromperipheralblood blood
44 chr3:179457000-179461800 Weak transcription Right Atrium heart
45 chr3:179457200-179463800 Strong transcription Dnd41 blood
46 chr3:179457600-179462400 Strong transcription HUES48 Cell Line embryonic stem cell
47 chr3:179457600-179463000 Strong transcription Stomach Smooth Muscle stomach
48 chr3:179457600-179463000 Strong transcription Thymus Thymus
49 chr3:179457800-179461200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
50 chr3:179457800-179461400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung

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Last update: Aug 31, 2015