Variant report

Variant	rs11919212
Chromosome Location	chr3:150819976-150819977
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150818466..150820252-chr3:150830514..150832055,2	MCF-7	breast:
2	chr3:150806500..150808357-chr3:150818447..150820046,2	MCF-7	breast:
3	chr3:150812906..150816565-chr3:150818005..150820586,3	K562	blood:
4	chr3:150813043..150817753-chr3:150819414..150822906,4	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1003246	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1005726	0.94[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10755104	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10935825	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10935826	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10935827	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10935828	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11914598	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs12489984	0.85[EUR][1000 genomes]
rs1431492	0.97[EUR][1000 genomes]
rs1431493	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16863172	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1835668	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1897296	0.89[CEU][hapmap]
rs1920392	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2014240	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2060081	0.94[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28594277	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3773615	0.94[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3915228	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61184267	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6414377	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6440721	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6765294	0.94[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6767918	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs6772640	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6780120	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6787683	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs6790661	0.85[EUR][1000 genomes]
rs6801591	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6809388	0.89[CEU][hapmap]
rs6809705	0.89[CEU][hapmap];0.84[AMR][1000 genomes]
rs7427471	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs747205	0.85[EUR][1000 genomes]
rs7633492	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7645665	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9289832	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9683109	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs9813224	0.84[EUR][1000 genomes]
rs9822304	0.89[EUR][1000 genomes]
rs9823077	0.94[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9829728	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9848163	0.88[EUR][1000 genomes]
rs9850016	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs9876500	0.94[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv877648	chr3:150792444-150895145	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150809800-150827400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:150811600-150821000	Weak transcription	Brain Substantia Nigra	brain
3	chr3:150812000-150824800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:150818000-150823600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:150818400-150820400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:150818400-150821000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:150818800-150820800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:150819000-150820200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:150819000-150820200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:150819000-150820200	Enhancers	Fetal Heart	heart
11	chr3:150819000-150820600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr3:150819000-150820600	Enhancers	Fetal Muscle Leg	muscle
13	chr3:150819000-150820800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr3:150819000-150822000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr3:150819200-150820000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr3:150819200-150820200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr3:150819200-150820200	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr3:150819200-150820600	Enhancers	H9 Cell Line	embryonic stem cell
19	chr3:150819200-150820800	Enhancers	H1 Cell Line	embryonic stem cell
20	chr3:150819400-150820400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr3:150819600-150820200	Enhancers	Primary hematopoietic stem cells	blood
22	chr3:150819600-150820400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:150819600-150822000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:150819600-150824400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:150819800-150820000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:150819800-150820600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr3:150819800-150823000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:150819800-150824600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr3:150819800-150825000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr3:150819800-150825000	Weak transcription	Brain Anterior Caudate	brain
31	chr3:150819800-150825600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr3:150819800-150827600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr3:150819800-150847600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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