Variant report

Variant	rs1005726
Chromosome Location	chr3:150886786-150886787
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150874286..150875010-chr3:150885974..150886870,2	MCF-7	breast:
2	chr3:150885743..150886838-chr3:151000415..151001396,8	K562	blood:
3	chr3:150886462..150889127-chr3:150925386..150928089,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1003246	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10755104	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs10935825	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10935826	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10935827	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs10935828	0.94[CEU][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs11914598	0.94[CEU][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs11919212	0.94[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12489984	0.88[EUR][1000 genomes]
rs1431492	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1431493	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16863172	0.94[CEU][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs1835668	0.94[CEU][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes]
rs1897296	0.84[CEU][hapmap]
rs1920392	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2014240	0.94[CEU][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs2060081	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28594277	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28690162	0.81[EUR][1000 genomes]
rs3773615	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3915228	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61184267	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6414377	0.94[CEU][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs6440721	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6765294	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6767918	0.94[CEU][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs6772640	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs6780120	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6787683	0.94[CEU][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs6790661	0.88[EUR][1000 genomes]
rs6800064	0.83[EUR][1000 genomes]
rs6801591	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6809388	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6809705	0.94[CEU][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7427471	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs747205	0.88[EUR][1000 genomes]
rs7620353	0.82[CEU][hapmap]
rs7633492	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7645665	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.93[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9289832	0.94[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9683109	0.94[CEU][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs9813224	0.89[EUR][1000 genomes]
rs9822304	0.85[EUR][1000 genomes]
rs9823077	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9829728	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs9848163	0.84[EUR][1000 genomes]
rs9850016	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs9876500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv877648	chr3:150792444-150895145	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150863200-150889000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:150868800-150887400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:150871200-150888400	Weak transcription	Fetal Intestine Small	intestine
4	chr3:150872800-150910800	Weak transcription	Brain Germinal Matrix	brain
5	chr3:150873200-150887000	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:150873200-150888800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:150873200-150910200	Weak transcription	Brain Angular Gyrus	brain
8	chr3:150873600-150889600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:150873800-150890000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:150873800-150890000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:150873800-150913800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:150874200-150888600	Weak transcription	Brain Anterior Caudate	brain
13	chr3:150874200-150888800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:150874200-150896000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr3:150874600-150888400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:150874600-150889200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr3:150874800-150900200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr3:150877600-150888800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:150878000-150888400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:150878000-150946000	Weak transcription	Placenta	Placenta
21	chr3:150878400-150888800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr3:150878400-150890800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr3:150879400-150887800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:150880400-150900200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr3:150880800-150900400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr3:150882800-150888200	Weak transcription	HepG2	liver
27	chr3:150883400-150889000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr3:150883800-150896000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr3:150884200-150887200	Weak transcription	Dnd41	blood
30	chr3:150884200-150888400	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr3:150884200-150906600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr3:150884400-150893400	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr3:150885800-150887200	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr3:150886000-150887200	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr3:150886000-150890800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr3:150886200-150886800	Enhancers	Liver	Liver
37	chr3:150886200-150887400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr3:150886200-150887600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr3:150886200-150887600	Enhancers	GM12878-XiMat	blood
40	chr3:150886200-150889800	Enhancers	Primary B cells from peripheral blood	blood
41	chr3:150886200-150890400	Enhancers	Primary T cells fromperipheralblood	blood
42	chr3:150886200-150890400	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr3:150886200-150890400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr3:150886200-150890800	Enhancers	Primary hematopoietic stem cells	blood
45	chr3:150886200-150890800	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr3:150886200-150892400	Enhancers	Primary T cells from cord blood	blood
47	chr3:150886200-150893000	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr3:150886400-150886800	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr3:150886400-150887200	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr3:150886400-150887400	Enhancers	Primary B cells from cord blood	blood

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