Variant report

Variant	rs7620353
Chromosome Location	chr3:150947555-150947556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1005726	0.82[CEU][hapmap]
rs1352887	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1388622	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1388623	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1388624	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs1388626	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1466684	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1491978	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs1491979	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1491980	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1491981	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1873622	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1907637	0.84[JPT][hapmap];1.00[YRI][hapmap]
rs2046934	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2060081	0.82[CEU][hapmap]
rs2141631	0.87[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs2172249	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2870517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2904431	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3732764	1.00[JPT][hapmap]
rs3773615	0.82[CEU][hapmap]
rs3821667	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs3971191	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs3975403	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs3975404	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4146770	0.86[JPT][hapmap]
rs4603933	0.84[JPT][hapmap];1.00[YRI][hapmap]
rs4679802	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4680275	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4680374	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6440731	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6440732	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6763983	0.85[ASN][1000 genomes]
rs6769397	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6782212	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6790748	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6809388	0.85[JPT][hapmap]
rs6809705	0.92[JPT][hapmap]
rs7611328	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7615865	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7616382	0.85[JPT][hapmap];1.00[YRI][hapmap]
rs7621876	0.88[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7633362	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs9820422	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs9849395	1.00[YRI][hapmap]
rs9877389	0.92[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150928800-150952800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:150928800-150953000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:150938600-150948600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:150941600-150948000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:150942200-150948600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:150943000-150947800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:150943200-150948600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr3:150943800-150947600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:150944000-150948600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr3:150944200-150948200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:150945200-150947800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:150945200-150948200	Enhancers	Primary B cells from cord blood	blood
13	chr3:150945200-150948200	Enhancers	Primary B cells from peripheral blood	blood
14	chr3:150946000-150948000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr3:150946200-150948000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr3:150946200-150979400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:150946400-150947800	Weak transcription	Placenta	Placenta
18	chr3:150946400-150948400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr3:150946400-150948600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr3:150946600-150947800	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr3:150946600-150948000	Weak transcription	Fetal Thymus	thymus
22	chr3:150946600-150948000	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr3:150946600-150948200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr3:150946600-150948200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr3:150946600-150948600	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr3:150946600-150950800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr3:150946600-150957800	Weak transcription	Gastric	stomach
28	chr3:150946800-150947800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr3:150946800-150947800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr3:150946800-150948000	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr3:150946800-150948000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr3:150946800-150948000	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr3:150946800-150948000	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr3:150946800-150948000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr3:150946800-150948000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr3:150946800-150948000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr3:150946800-150948000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr3:150946800-150948000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr3:150946800-150948000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr3:150946800-150948000	Weak transcription	Dnd41	blood
41	chr3:150946800-150948200	Weak transcription	Brain Anterior Caudate	brain
42	chr3:150946800-150948400	Weak transcription	Adipose Nuclei	Adipose
43	chr3:150946800-150948600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr3:150946800-150948600	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr3:150946800-150948600	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr3:150946800-150948800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr3:150946800-150951800	Weak transcription	Rectal Smooth Muscle	rectum
48	chr3:150946800-150956600	Weak transcription	Fetal Lung	lung
49	chr3:150946800-150969200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr3:150946800-150983600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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