Variant report

Variant	rs6763983
Chromosome Location	chr3:151009677-151009678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151008218..151009783-chr3:151044914..151046119,9	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10935838	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11922647	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1352887	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1388619	0.81[ASN][1000 genomes]
rs1388622	0.81[ASN][1000 genomes]
rs1388623	0.81[ASN][1000 genomes]
rs1388624	0.81[ASN][1000 genomes]
rs1388626	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1466684	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1491979	0.81[ASN][1000 genomes]
rs1491980	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1491981	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1873622	0.83[ASN][1000 genomes]
rs2046934	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2172249	0.85[ASN][1000 genomes]
rs2870517	0.90[ASN][1000 genomes]
rs2904431	0.84[ASN][1000 genomes]
rs3732762	0.81[ASN][1000 genomes]
rs3821667	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3971191	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3975401	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3975403	0.81[ASN][1000 genomes]
rs3975404	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4679802	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4680275	0.86[ASN][1000 genomes]
rs4680374	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6440731	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6440732	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6769397	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6782212	0.83[ASN][1000 genomes]
rs6790748	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6809699	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7611328	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7615865	0.84[ASN][1000 genomes]
rs7620353	0.85[ASN][1000 genomes]
rs7621876	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7633362	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9820422	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9877389	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9878459	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150983000-151011000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:150984400-151022400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:150999400-151011200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr3:151002000-151010600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:151002000-151012000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:151002200-151010800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:151002400-151018000	Weak transcription	NHLF	lung
8	chr3:151002600-151044000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr3:151002800-151010800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:151002800-151011200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:151005200-151014000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:151008800-151010400	Weak transcription	NHEK	skin
13	chr3:151008800-151011200	Weak transcription	Esophagus	oesophagus
14	chr3:151009000-151011200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:151009600-151011800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:151009600-151018200	Strong transcription	HMEC	breast

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