Variant report

Variant	rs2904431
Chromosome Location	chr3:150946875-150946876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2141631	0.82[EUR][1000 genomes]
rs2870517	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4680275	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6440731	0.86[ASN][1000 genomes]
rs6440732	0.83[ASN][1000 genomes]
rs6763983	0.84[ASN][1000 genomes]
rs7611328	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7620353	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150928800-150952800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:150928800-150953000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:150938600-150948600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:150941600-150948000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:150942200-150947000	Enhancers	Primary T cells from cord blood	blood
6	chr3:150942200-150948600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:150942800-150947000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:150943000-150947800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:150943200-150948600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr3:150943800-150947000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:150943800-150947000	Enhancers	NHLF	lung
12	chr3:150943800-150947200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:150943800-150947600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:150944000-150947200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:150944000-150948600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr3:150944200-150948200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr3:150944600-150947000	Enhancers	Colon Smooth Muscle	Colon
18	chr3:150945000-150947000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:150945200-150947000	Enhancers	Brain Angular Gyrus	brain
20	chr3:150945200-150947000	Enhancers	Brain Substantia Nigra	brain
21	chr3:150945200-150947000	Enhancers	GM12878-XiMat	blood
22	chr3:150945200-150947800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr3:150945200-150948200	Enhancers	Primary B cells from cord blood	blood
24	chr3:150945200-150948200	Enhancers	Primary B cells from peripheral blood	blood
25	chr3:150945400-150947000	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr3:150945400-150947000	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr3:150945400-150947400	Enhancers	Fetal Brain Male	brain
28	chr3:150945800-150947000	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr3:150945800-150947000	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr3:150945800-150947000	Enhancers	HUVEC	blood vessel
31	chr3:150946000-150947000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:150946000-150947000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr3:150946000-150947000	Enhancers	NHEK	skin
34	chr3:150946000-150948000	Weak transcription	Duodenum Mucosa	Duodenum
35	chr3:150946200-150947000	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr3:150946200-150947000	Enhancers	Stomach Mucosa	stomach
37	chr3:150946200-150947000	Enhancers	A549	lung
38	chr3:150946200-150948000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr3:150946200-150979400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr3:150946400-150947800	Weak transcription	Placenta	Placenta
41	chr3:150946400-150948400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr3:150946400-150948600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr3:150946600-150947200	Enhancers	NH-A	brain
44	chr3:150946600-150947200	Enhancers	Osteobl	bone
45	chr3:150946600-150947800	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr3:150946600-150948000	Weak transcription	Fetal Thymus	thymus
47	chr3:150946600-150948000	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr3:150946600-150948200	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr3:150946600-150948200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr3:150946600-150948600	Weak transcription	Primary T cells fromperipheralblood	blood

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