Variant report

Variant	rs11919658
Chromosome Location	chr3:111321589-111321590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11928127	1.00[EUR][1000 genomes]
rs11929008	1.00[EUR][1000 genomes]
rs60275470	1.00[EUR][1000 genomes]
rs6766880	1.00[EUR][1000 genomes]
rs6802504	1.00[EUR][1000 genomes]
rs72939590	1.00[EUR][1000 genomes]
rs72939593	1.00[EUR][1000 genomes]
rs72939597	1.00[EUR][1000 genomes]
rs72947140	1.00[EUR][1000 genomes]
rs7641242	1.00[EUR][1000 genomes]
rs9871681	1.00[EUR][1000 genomes]
rs9882986	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv997756	chr3:111226058-111376585	Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111299400-111328600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr3:111314000-111326800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:111314200-111323400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:111314200-111327200	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr3:111314400-111324000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr3:111314400-111328600	Weak transcription	Thymus	Thymus
7	chr3:111314800-111323000	Weak transcription	NHEK	skin
8	chr3:111315400-111322600	Strong transcription	Dnd41	blood
9	chr3:111315600-111323400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:111316000-111322000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:111316000-111322000	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr3:111316600-111321600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr3:111317400-111321600	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr3:111317600-111323000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:111317800-111322800	Weak transcription	Osteobl	bone
16	chr3:111317800-111326000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:111318600-111326800	Strong transcription	Primary T cells from cord blood	blood
18	chr3:111318800-111323200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr3:111319000-111322600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr3:111319800-111321600	Weak transcription	Fetal Thymus	thymus
21	chr3:111319800-111321800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr3:111320600-111322000	Enhancers	A549	lung
23	chr3:111320600-111322200	Weak transcription	Primary B cells from peripheral blood	blood
24	chr3:111320800-111322800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr3:111321000-111322400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr3:111321000-111323000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:111321000-111323200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:111321200-111322200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr3:111321200-111322600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links